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On 4/7/2012 9:40 AM, De-Jian Zhao wrote:Thanks, Marco. I was not trying to run a native linux apps, and instead tried to rebuild the app from source. The BLAST software provides the Build.sh and Check.sh scripts under the dirctory of ncbi-blast-2.2.26+-src.tar\ncbi-blast-2.2.26+-src\c++\compilers\cygwin\. So I think it is possible to run the software under cygwin. However, the compilation stopped at "checking for python", even if python was installed. That's to say, I installed the latest python and the compilation could find it, but the compilation tried to search for python2.3 and 2.4 further, and stopped when searching for 2.4.Dear all,{cut]
I noticed that there is a command - rpm - under Cygwin 1.7. Does that mean RPM packages can be installed into Cygwin?
I tried to install ncbi-blast-2.2.26+-3.i686.rpm (see: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ ) into Cygwin 1.7.13 with the command "install -i ncbi-blast-2.2.26+-3.i686.rpm". However, error message appeared as below. I tried to search for the missing libs using the setup.exe of Cygwin. It seems that some of them were not present, such as libc.so.6, libdl.so.2, libm.so.6, libnsl.so.1, and libz.so.1. Where can I get these libs? Thanks!
$ rpm -i ncbi-blast-2.2.26+-3.i686.rpm error: Failed dependencies: /usr/bin/perl is needed by ncbi-blast-2.2.26+-3 libbz2.so.1 is needed by ncbi-blast-2.2.26+-3 libc.so.6 is needed by ncbi-blast-2.2.26+-3...isn't it?
from cygwin website (first page):
Cygwin is not:
- a way to run native Linux apps on Windows. You must rebuild your application
from source if you want it to run on Windows.
- a way to magically make native Windows apps aware of UNIX® functionality like
signals, ptys, etc. Again, you need to build your apps from source if you want
to take advantage of Cygwin functionality.
Regards Marco
Regards Dejian
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