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Hi, I have R installed through Cygwin ports, and I am trying to compile some external R packages (from Bioconductor). When doing so, I get the following error while building the IRanges Bioconductor package: > In file included from IntervalTree.c:3:0: > common.h:59:24: fatal error: mingw/math.h: No such file or directory > compilation terminated. > /usr/lib/R/etc/Makeconf:121: recipe for target `IntervalTree.o' failed > make: *** [IntervalTree.o] Error 1 > ERROR: compilation failed for package =91IRanges=92 As far as I understand, this is an issue related to paths/links on Cygwin, as math.h is indeed installed by the mingw-runtime package, but R apparently can't find it. If you want to reproduce the issue just install R through the Cygwin ports, open an R session and write: > source("http://bioconductor.org/biocLite.R") > biocLite() which will perform a standard Bioconductor installation. Can anybody please help me to find a fix or workaround for this? Any help is really appreciated. Thank you. Best, Enrico Ferrero
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